BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB037B04SP1|AL430342
(873 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1044 1007 0.0
3x_Contig1342 262 8e-70
>3x_Contig1044
Length = 4552
Score = 1007 bits (507), Expect = 0.0
Identities = 529/533 (99%), Gaps = 3/533 (0%)
Strand = Plus / Plus
Query: 344 gtctgggctccttttatcaacagtaactcttcatcagcgccccaatcc-tcacagagaat 402
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gtctgggctccttttatcaacagtaactcttcatcagcgccccaatccatcacagagaat 60
Query: 403 cgggtatgagttggtttcaatcactttatagtcatggcttggccggtgcttaccgttgta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgggtatgagttggtttcaatcactttatagtcatggcttggccggtgcttaccgttgta 120
Query: 463 taacccttttgcgaas-atg-gcacacataaatcatactctggacacaccgcacatgtta 520
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taacccttttgcgaagcatgtgcacacataaatcatactctggacacaccgcacatgtta 180
Query: 521 ttctgactctgtttgtacaatctgcagaacaaatatcacaatggaacttgttagacatgg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttctgactctgtttgtacaatctgcagaacaaatatcacaatggaacttgttagacatgg 240
Query: 581 tgacggttgaacaaggagaagcagttcaaagtcaaacagatgtaaagctaaatcactata 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgacggttgaacaaggagaagcagttcaaagtcaaacagatgtaaagctaaatcactata 300
Query: 641 acagtttgcgggtcctcgaagttagttatctttttatatcaatgagtttgacttattctt 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acagtttgcgggtcctcgaagttagttatctttttatatcaatgagtttgacttattctt 360
Query: 701 taaactctcttgaaatcacttgttgattctttagaacatcataattgaactttccatgta 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taaactctcttgaaatcacttgttgattctttagaacatcataattgaactttccatgta 420
Query: 761 aacaggagaacagaatgcgggactgttacatccttacattcttattaaggatgaaaaatc 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacaggagaacagaatgcgggactgttacatccttacattcttattaaggatgaaaaatc 480
Query: 821 tgaaaatcctgaaattcgagaacgctaatttcataaaatttgataaaaccaaa 873
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgaaaatcctgaaattcgagaacgctaatttcataaaatttgataaaaccaaa 533
>3x_Contig1342
Length = 7422
Score = 262 bits (132), Expect = 8e-70
Identities = 140/142 (98%), Gaps = 1/142 (0%)
Strand = Plus / Minus
Query: 1 gatcatcggcgtcgaagmc-atatctttgaccggaccttcggcctcattctcgaactccg 59
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gatcatcggcgtcgaagaccatatctttgaccggaccttcggcctcattctcgaactccg 83
Query: 60 tttcgaattccaatctacctggcataaacccttgcacttcatggcatgacggttgtgatg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tttcgaattccaatctacctggcataaacccttgcacttcatggcatgacggttgtgatg 23
Query: 120 ccatcggtttcctaggaggttc 141
||||||||||||||||||||||
Sbjct: 22 ccatcggtttcctaggaggttc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6536
Number of Sequences: 1807
Number of extensions: 6536
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)